8ATR

Small molecular stabilizer for C-RAF (pS259) and 14-3-3 (1075297)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES (pH 7.1), PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.754.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.106α = 90
b = 113.239β = 90
c = 63.29γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2022-01-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.873130ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.742.231000.99813.11.933236
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.730.93

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3iqu1.742.2331569164199.910.187730.186520.21061RANDOM17.91
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.84-0.13-0.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.24
r_dihedral_angle_4_deg13.268
r_dihedral_angle_3_deg10.952
r_long_range_B_refined6.585
r_long_range_B_other6.462
r_scangle_other5.318
r_dihedral_angle_1_deg4.421
r_mcangle_it3.593
r_mcangle_other3.592
r_scbond_it3.511
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.24
r_dihedral_angle_4_deg13.268
r_dihedral_angle_3_deg10.952
r_long_range_B_refined6.585
r_long_range_B_other6.462
r_scangle_other5.318
r_dihedral_angle_1_deg4.421
r_mcangle_it3.593
r_mcangle_other3.592
r_scbond_it3.511
r_scbond_other3.509
r_mcbond_it2.398
r_mcbond_other2.395
r_angle_other_deg1.124
r_angle_refined_deg1.068
r_chiral_restr0.064
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1930
Nucleic Acid Atoms
Solvent Atoms267
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing