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Crystal structure of AO75L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.1 291 37.5% PEG3350, PEG1K, MPD
0.1M Tris-0.1M Bicine
0.03M MgCl2, 0.03CaCl2
Crystal Properties Matthews coefficient Solvent content 2.35 47.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.708 α = 90.46 b = 90.772 β = 108.6 c = 91.676 γ = 109.71
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.919319 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 76.84 92.1 0.054 0.076 0.996 9.84 1.796 237952 43.193
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.31 86.1 0.373 0.527 0.773 2.36 1.776
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 76.84 115844 6319 97.23 0.1962 0.1938 0.1999 0.2409 0.2428 RANDOM 39.389
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.59 0.04 0.4 0.89 -0.26 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.83 r_dihedral_angle_4_deg 16.843 r_dihedral_angle_3_deg 14.306 r_dihedral_angle_1_deg 6.737 r_angle_refined_deg 1.244 r_angle_other_deg 1.113 r_chiral_restr 0.051 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.83 r_dihedral_angle_4_deg 16.843 r_dihedral_angle_3_deg 14.306 r_dihedral_angle_1_deg 6.737 r_angle_refined_deg 1.244 r_angle_other_deg 1.113 r_chiral_restr 0.051 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18778 Nucleic Acid Atoms Solvent Atoms 1143 Heterogen Atoms 354
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction PHENIX phasing