8AQC

Small molecular stabilizer for ERalpha and 14-3-3 (1080294)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2770.095 M HEPES (pH 7.1), PEG400 (26% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.6453.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.876α = 90
b = 112.352β = 90
c = 62.344γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2022-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.033200PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.545.4299.70.99923.613.446273
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.520.957

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4JC31.545.4243981227399.560.146930.145640.17195RANDOM17.258
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.640.07-1.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.647
r_dihedral_angle_4_deg15.734
r_dihedral_angle_3_deg11.102
r_dihedral_angle_1_deg4.512
r_long_range_B_refined2.553
r_long_range_B_other2.283
r_scangle_other1.799
r_rigid_bond_restr1.487
r_mcangle_it1.421
r_mcangle_other1.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.647
r_dihedral_angle_4_deg15.734
r_dihedral_angle_3_deg11.102
r_dihedral_angle_1_deg4.512
r_long_range_B_refined2.553
r_long_range_B_other2.283
r_scangle_other1.799
r_rigid_bond_restr1.487
r_mcangle_it1.421
r_mcangle_other1.42
r_scbond_it1.409
r_scbond_other1.408
r_angle_refined_deg1.298
r_angle_other_deg1.27
r_mcbond_it0.98
r_mcbond_other0.98
r_chiral_restr0.083
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1899
Nucleic Acid Atoms
Solvent Atoms280
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
DIALSdata reduction
Aimlessdata scaling
MOLREPphasing