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Crystal structure of the PulL-PulM C-terminal domain heterocomplex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NMR models
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 0%w/v PEG 3350, 0.2M KCl
Crystal Properties Matthews coefficient Solvent content 3.32 62.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.899 α = 90 b = 117.899 β = 90 c = 110.002 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.987 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.77 102.104 100 0.099 0.101 0.016 0.999 25 38.8 11982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.77 2.819 100 1.982 2.007 0.311 0.834 2.3 41.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NMR models 2.77 102.1 11401 581 99.94 0.27277 0.27173 0.29278 0.3023 RANDOM 122.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.1 -0.19 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.539 r_dihedral_angle_3_deg 18.315 r_dihedral_angle_4_deg 17.55 r_dihedral_angle_1_deg 7.477 r_long_range_B_refined 4.906 r_long_range_B_other 4.861 r_mcangle_it 1.708 r_mcangle_other 1.708 r_scangle_other 1.469 r_angle_refined_deg 1.426
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.539 r_dihedral_angle_3_deg 18.315 r_dihedral_angle_4_deg 17.55 r_dihedral_angle_1_deg 7.477 r_long_range_B_refined 4.906 r_long_range_B_other 4.861 r_mcangle_it 1.708 r_mcangle_other 1.708 r_scangle_other 1.469 r_angle_refined_deg 1.426 r_angle_other_deg 1.148 r_mcbond_it 0.985 r_mcbond_other 0.985 r_scbond_it 0.861 r_scbond_other 0.861 r_chiral_restr 0.114 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2326 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHASER phasing AutoProcess data scaling AutoProcess data reduction