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Crystal structure of PulL C-ter domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NMR structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 0.5 M LiSO4 and 15%w/v PEG 8K
Crystal Properties Matthews coefficient Solvent content 2.48 50.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.3 α = 90 b = 80.3 β = 90 c = 80.3 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.987 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.895 56.781 100 0.073 0.074 0.012 0.999 30.3 39.5 7013
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.895 1.927 1.814 1.837 0.291 0.782 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NMR structure 1.895 56.78 6267 746 100 0.24464 0.24076 0.2473 0.27651 0.2749 RANDOM 64.178
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 37.433 r_long_range_B_refined 37.389 r_scbond_it 33.898 r_scbond_other 33.487 r_mcangle_other 33.416 r_scangle_other 33.394 r_mcangle_it 33.391 r_dihedral_angle_2_deg 33.049 r_mcbond_it 30.874 r_mcbond_other 30.812
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 37.433 r_long_range_B_refined 37.389 r_scbond_it 33.898 r_scbond_other 33.487 r_mcangle_other 33.416 r_scangle_other 33.394 r_mcangle_it 33.391 r_dihedral_angle_2_deg 33.049 r_mcbond_it 30.874 r_mcbond_other 30.812 r_dihedral_angle_3_deg 19.067 r_dihedral_angle_4_deg 17.337 r_dihedral_angle_1_deg 6.734 r_angle_refined_deg 1.291 r_angle_other_deg 1.006 r_chiral_restr 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 579 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PHASER phasing Aimless data scaling XDS data reduction