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Lysozyme, 9-11 fs FEL pulses as determined by XTCAV
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4N5R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 4 293 10 % NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in 100 mM gadoteridol 30 min. before data collection
Crystal Properties Matthews coefficient Solvent content 2.05 40.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.75 α = 90 b = 77.75 β = 90 c = 38.9 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL CS-PAD CXI-1 2015-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SLAC LCLS BEAMLINE CXI 1.393 SLAC LCLS CXI
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 injection
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 22.45 100 0.923 0.237 3.4 1 15159
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.68 100 0.411 0.83 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 4N5R 1.665 22.45 15119 1512 99.697 0.205 0.2011 0.2077 0.2396 0.2434 18.706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.003 -0.003 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.826 r_dihedral_angle_4_deg 21.87 r_dihedral_angle_3_deg 14.639 r_dihedral_angle_1_deg 6.938 r_lrange_it 4.65 r_lrange_other 4.625 r_scangle_it 3.723 r_scangle_other 3.721 r_scbond_it 2.478 r_scbond_other 2.476
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.826 r_dihedral_angle_4_deg 21.87 r_dihedral_angle_3_deg 14.639 r_dihedral_angle_1_deg 6.938 r_lrange_it 4.65 r_lrange_other 4.625 r_scangle_it 3.723 r_scangle_other 3.721 r_scbond_it 2.478 r_scbond_other 2.476 r_mcangle_other 1.89 r_mcangle_it 1.888 r_angle_refined_deg 1.57 r_angle_other_deg 1.45 r_mcbond_it 1.352 r_mcbond_other 1.288 r_nbd_refined 0.223 r_symmetry_nbd_other 0.2 r_nbd_other 0.191 r_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.133 r_symmetry_nbtor_other 0.092 r_chiral_restr 0.09 r_symmetry_nbd_refined 0.077 r_metal_ion_refined 0.051 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 992 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling REFMAC phasing