8A9E | pdb_00008a9e

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4N5R

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	4	293	10 % NaCl, 0.1 M sodium acetate buffer, pH 4.0, soaked in 100 mM gadoteridol 30 min. before data collection

Crystal Properties
Matthews coefficient	Solvent content
2.05	40.03

Symmetry
Space Group	P 43 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	CS-PAD CXI-1		2015-02-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SLAC LCLS BEAMLINE CXI	1.393	SLAC LCLS	CXI

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.64	22.45	100	0.923	0.237	3.4	1		15159

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.64	1.68		100	0.411	0.83	1.3

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	4N5R	1.665	22.45	15119	1512	99.697	0.205	0.2011	0.2077	0.2396	0.2434	18.706

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.003			-0.003		0.005

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.826
r_dihedral_angle_4_deg	21.87
r_dihedral_angle_3_deg	14.639
r_dihedral_angle_1_deg	6.938
r_lrange_it	4.65
r_lrange_other	4.625
r_scangle_it	3.723
r_scangle_other	3.721
r_scbond_it	2.478
r_scbond_other	2.476

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.826
r_dihedral_angle_4_deg	21.87
r_dihedral_angle_3_deg	14.639
r_dihedral_angle_1_deg	6.938
r_lrange_it	4.65
r_lrange_other	4.625
r_scangle_it	3.723
r_scangle_other	3.721
r_scbond_it	2.478
r_scbond_other	2.476
r_mcangle_other	1.89
r_mcangle_it	1.888
r_angle_refined_deg	1.57
r_angle_other_deg	1.45
r_mcbond_it	1.352
r_mcbond_other	1.288
r_nbd_refined	0.223
r_symmetry_nbd_other	0.2
r_nbd_other	0.191
r_xyhbond_nbd_refined	0.184
r_nbtor_refined	0.168
r_symmetry_xyhbond_nbd_refined	0.133
r_symmetry_nbtor_other	0.092
r_chiral_restr	0.09
r_symmetry_nbd_refined	0.077
r_metal_ion_refined	0.051
r_bond_refined_d	0.009
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	992
Nucleic Acid Atoms
Solvent Atoms	52
Heterogen Atoms	58

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.