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A hexameric barrel state of a de novo coiled-coil assembly: CC-Type2-(QgLaId)4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 293 1.5 mM peptide, 50 mM Sodium acetate, 1% w/v PEG 4000 at pH 5.0
Crystal Properties Matthews coefficient Solvent content 1.86 33.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.71 α = 90 b = 53.71 β = 90 c = 46.392 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2021-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 32.85 99.79 0.1462 0.162 0.06936 0.988 13.01 5.2 10984 20.91
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.398 99.91 1.009 1.145 0.5337 0.529 0.77 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.35 32.85 10446 565 99.75 0.1753 0.1743 0.1758 0.1937 0.1961 RANDOM 25.972
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 -0.24 -0.49 1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.274 r_dihedral_angle_1_deg 3.209 r_rigid_bond_restr 3.187 r_angle_refined_deg 1.177 r_angle_other_deg 0.402 r_chiral_restr 0.069 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 463 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction DIALS data reduction Arcimboldo phasing