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Structure of the fluorescent protein NeonCyan0.95 at pH 7.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LTR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100 mM HEPES pH 7.5 and 18% w/v PEG 8,000
Crystal Properties Matthews coefficient Solvent content 1.6 23.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.852 α = 89.95 b = 60.662 β = 71.79 c = 67.074 γ = 90.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.966 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 63.71 84.7 0.046 0.999 6.4 1.6 127042
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.64 51.4 0.577 0.84 1.4 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5LTR 1.51 63.71 112268 3938 100 0.1644 0.1634 0.1539 0.1863 0.1723 RANDOM 28.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.854 r_dihedral_angle_4_deg 18.055 r_dihedral_angle_3_deg 12.9 r_dihedral_angle_1_deg 6.389 r_angle_refined_deg 1.675 r_angle_other_deg 1.336 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.854 r_dihedral_angle_4_deg 18.055 r_dihedral_angle_3_deg 12.9 r_dihedral_angle_1_deg 6.389 r_angle_refined_deg 1.675 r_angle_other_deg 1.336 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7092 Nucleic Acid Atoms Solvent Atoms 490 Heterogen Atoms
Software Software Software Name Purpose autoPROC data processing XDS data reduction XDS data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction