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TA complex from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M Potassium chloride,
0.1 M Magnesium acetate tetrahydrate
0.05 M Sodium cacodylate trihydrate pH 6.5
10% w/v Polyethylene glycol 8,000
Crystal Properties Matthews coefficient Solvent content 2.18 43.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.847 α = 73.16 b = 74.501 β = 70.24 c = 74.882 γ = 70.03
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 1.0 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44.55 95.67 0.048 0.064 0.042 0.996 5.1 2 59128
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 0.323
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 44.55 59128 2962 96.36 0.2036 0.2014 0.214 0.24685 0.2394 RANDOM 48.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.68 -1.23 -0.8 0.2 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.512 r_dihedral_angle_4_deg 20.681 r_dihedral_angle_3_deg 15.05 r_long_range_B_refined 9.122 r_long_range_B_other 9.083 r_dihedral_angle_1_deg 6.023 r_scangle_other 5.28 r_mcangle_it 3.676 r_mcangle_other 3.676 r_scbond_it 3.606
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.512 r_dihedral_angle_4_deg 20.681 r_dihedral_angle_3_deg 15.05 r_long_range_B_refined 9.122 r_long_range_B_other 9.083 r_dihedral_angle_1_deg 6.023 r_scangle_other 5.28 r_mcangle_it 3.676 r_mcangle_other 3.676 r_scbond_it 3.606 r_scbond_other 3.605 r_mcbond_it 2.858 r_mcbond_other 2.858 r_angle_refined_deg 1.936 r_angle_other_deg 1.469 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7388 Nucleic Acid Atoms Solvent Atoms 618 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing