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Orb2A residues 1-9 MYNKFVNFI
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 4.83 α = 90 b = 23.1 β = 92.001 c = 29.84 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 2018-10-17
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ELECTRON MICROSCOPE 0.0251
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 18.262 83.3 0.156 0.161 0.994 8.24 13.873 2596 12.406
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.08 69.9 0.712 0.776 0.572 1.79 7.196
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B ELECTRON CRYSTALLOGRAPHY FREE R-VALUE 1.05 18.262 2596 260 83.258 0.183 0.1809 0.1873 0.201 0.2161 10.716
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.579 0.131 -0.41 -0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.531 r_dihedral_angle_3_deg 15.062 r_rigid_bond_restr 9.469 r_dihedral_angle_1_deg 6.544 r_lrange_it 3.303 r_lrange_other 3.298 r_scbond_other 3.037 r_scbond_it 3.036 r_mcbond_it 2.543 r_scangle_it 2.536
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 47.531 r_dihedral_angle_3_deg 15.062 r_rigid_bond_restr 9.469 r_dihedral_angle_1_deg 6.544 r_lrange_it 3.303 r_lrange_other 3.298 r_scbond_other 3.037 r_scbond_it 3.036 r_mcbond_it 2.543 r_scangle_it 2.536 r_scangle_other 2.518 r_mcangle_it 2.346 r_mcangle_other 2.345 r_mcbond_other 2.104 r_angle_refined_deg 1.843 r_angle_other_deg 0.638 r_symmetry_xyhbond_nbd_refined 0.356 r_xyhbond_nbd_refined 0.254 r_nbd_other 0.234 r_nbtor_refined 0.194 r_symmetry_nbd_other 0.191 r_nbd_refined 0.138 r_chiral_restr 0.108 r_symmetry_nbtor_other 0.079 r_symmetry_nbd_refined 0.051 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.002
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction
Sample Amyloid fibril of Orb2A residues 1-9 MYNKFVNFI
Specimen Preparation Sample Aggregation State 3D ARRAY Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method CRYSTALLOGRAPHY Number of Particles Reported Resolution (Å) Resolution Method DIFFRACTION PATTERN/LAYERLINES Other Details Refinement Type Symmetry Type 3D CRYSTAL Space Group Name Length a 4.83 Length b 23.1 Length c 23.1 Angle Alpha 90 Angle Beta 92 Angle Gamma 90
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI CETA (4k x 4k) Electron Dose (electrons/Å**2) 0.01
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode DIFFRACTION Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE