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Structure of the periplasmic domain of GldM from Capnocytophaga canimorsus
ELECTRON MICROSCOPY
Sample
Type IX Secretion System/gliding motility GldM periplasmic domain
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Wait time 10 s
Blot time 2 s
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
595559
Reported Resolution (Å)
3.4
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
AB INITIO MODEL
Refinement Target
Overall B Value
93.02
Fitting Procedure
Details
A homology model based on the structure of FjoGldM (PDB 6EY4) was used as a starting model and modified to fit the EM density using Coot. Refinement w ...
A homology model based on the structure of FjoGldM (PDB 6EY4) was used as a starting model and modified to fit the EM density using Coot. Refinement was carried out using Phenix.