7R0L

Structure of the FK1 domain of the FKBP51 G64S variant in complex with SAFit1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529312% PEG3350, 0.2 M NH4-acetate and HEPES-NaOH pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.2344.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.106α = 90
b = 48.592β = 90
c = 57.191γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2021-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.145.1199.90.0610.0730.0390.99911.96.351727
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.121.3161.5840.8690.6836.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4TW61.137.00351662251799.8610.1440.14310.170615.762
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.76-0.8740.114
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.009
r_rigid_bond_restr10.512
r_dihedral_angle_3_deg9.055
r_dihedral_angle_4_deg8.503
r_dihedral_angle_1_deg7.423
r_scbond_it6.673
r_scbond_other6.667
r_lrange_it5.438
r_lrange_other5.091
r_scangle_it4.643
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.009
r_rigid_bond_restr10.512
r_dihedral_angle_3_deg9.055
r_dihedral_angle_4_deg8.503
r_dihedral_angle_1_deg7.423
r_scbond_it6.673
r_scbond_other6.667
r_lrange_it5.438
r_lrange_other5.091
r_scangle_it4.643
r_scangle_other4.64
r_mcangle_it2.401
r_mcangle_other2.4
r_mcbond_other2.268
r_mcbond_it2.266
r_angle_refined_deg2.149
r_angle_other_deg1.792
r_chiral_restr_other1.381
r_nbd_refined0.253
r_symmetry_nbd_other0.197
r_nbtor_refined0.179
r_nbd_other0.164
r_xyhbond_nbd_refined0.152
r_symmetry_xyhbond_nbd_refined0.131
r_symmetry_nbd_refined0.123
r_chiral_restr0.117
r_symmetry_nbtor_other0.084
r_bond_refined_d0.019
r_gen_planes_refined0.012
r_bond_other_d0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms961
Nucleic Acid Atoms
Solvent Atoms145
Heterogen Atoms81

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing