7QNI

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT L259V


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.6295.150.1M Sodium citrate, pH 5.6; 20% w/v PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.2445.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.412α = 90
b = 108.36β = 90
c = 123.902γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2018-10-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)0.9762PETRA III, EMBL c/o DESYP14 (MX2)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7354.241000.0210.9991813.233936828.434
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.731.761000.4940.7591.513.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM1.7354.23939334192799.9520.1850.18310.213334.522
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.871-2.881-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.796
r_dihedral_angle_4_deg14.894
r_dihedral_angle_3_deg12.842
r_dihedral_angle_1_deg6.586
r_lrange_it5.073
r_lrange_other5.059
r_scangle_it3.801
r_scangle_other3.8
r_mcangle_it2.79
r_mcangle_other2.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.796
r_dihedral_angle_4_deg14.894
r_dihedral_angle_3_deg12.842
r_dihedral_angle_1_deg6.586
r_lrange_it5.073
r_lrange_other5.059
r_scangle_it3.801
r_scangle_other3.8
r_mcangle_it2.79
r_mcangle_other2.79
r_scbond_it2.361
r_scbond_other2.336
r_mcbond_it1.835
r_mcbond_other1.832
r_angle_other_deg1.294
r_angle_refined_deg1.281
r_nbd_refined0.206
r_nbd_other0.186
r_symmetry_nbd_refined0.181
r_symmetry_nbd_other0.166
r_nbtor_refined0.151
r_symmetry_xyhbond_nbd_refined0.145
r_xyhbond_nbd_refined0.13
r_symmetry_nbtor_other0.075
r_chiral_restr0.06
r_symmetry_xyhbond_nbd_other0.053
r_bond_refined_d0.005
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2884
Nucleic Acid Atoms
Solvent Atoms153
Heterogen Atoms13

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing