7QNF

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NAD+, AND ETHYLENE GLYCOL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5295.150.1 M Bis-tris pH 8.5, 20 % (w/v) PEG 6000, 0.2 M NaF
Crystal Properties
Matthews coefficientSolvent content
2.1843.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.838α = 90
b = 85.765β = 90
c = 136.681γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2019-08-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97625DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1436.711000.070.9978.413.34091632.565
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.142.20.9760.5221.213.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM2.1436.70740834205099.9290.1810.17860.225741.637
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.8430.5881.254
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.76
r_dihedral_angle_4_deg14.737
r_dihedral_angle_3_deg13.556
r_dihedral_angle_1_deg7.459
r_lrange_it3.598
r_lrange_other3.554
r_angle_other_deg2.324
r_scangle_it1.505
r_scangle_other1.504
r_angle_refined_deg1.385
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.76
r_dihedral_angle_4_deg14.737
r_dihedral_angle_3_deg13.556
r_dihedral_angle_1_deg7.459
r_lrange_it3.598
r_lrange_other3.554
r_angle_other_deg2.324
r_scangle_it1.505
r_scangle_other1.504
r_angle_refined_deg1.385
r_mcangle_it1.271
r_mcangle_other1.271
r_scbond_it0.94
r_scbond_other0.94
r_mcbond_it0.792
r_mcbond_other0.792
r_symmetry_nbd_other0.211
r_nbd_other0.205
r_nbd_refined0.2
r_symmetry_xyhbond_nbd_refined0.193
r_symmetry_nbd_refined0.163
r_nbtor_refined0.151
r_xyhbond_nbd_refined0.142
r_symmetry_xyhbond_nbd_other0.099
r_chiral_restr0.062
r_symmetry_nbtor_other0.061
r_bond_other_d0.036
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5684
Nucleic Acid Atoms
Solvent Atoms266
Heterogen Atoms108

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
Aimlessdata scaling
REFMACphasing