7QLS

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND DIMETHOXYPHENYL ACETAMIDE


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5295.150.1 M Sodium acetate pH 4.5; 20 % (w/v) PEG 8000; 0.2 M NaF
Crystal Properties
Matthews coefficientSolvent content
2.244.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.262α = 90
b = 86.432β = 90
c = 137.833γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2021-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.9762MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.473.341000.0340.99914.113.32941553.437
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.491000.3490.7762.513.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM2.473.33329354146699.9660.1990.1970.229859.748
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.394-0.7693.162
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.753
r_dihedral_angle_3_deg14.281
r_dihedral_angle_4_deg12.658
r_dihedral_angle_1_deg7.099
r_lrange_it4.866
r_lrange_other4.864
r_mcangle_it3.158
r_mcangle_other3.158
r_scangle_it3.119
r_scangle_other3.118
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.753
r_dihedral_angle_3_deg14.281
r_dihedral_angle_4_deg12.658
r_dihedral_angle_1_deg7.099
r_lrange_it4.866
r_lrange_other4.864
r_mcangle_it3.158
r_mcangle_other3.158
r_scangle_it3.119
r_scangle_other3.118
r_angle_other_deg2.325
r_mcbond_it1.996
r_mcbond_other1.996
r_scbond_it1.904
r_scbond_other1.904
r_angle_refined_deg1.282
r_nbd_other0.23
r_symmetry_nbd_other0.219
r_symmetry_xyhbond_nbd_refined0.207
r_nbd_refined0.188
r_nbtor_refined0.146
r_symmetry_nbd_refined0.145
r_xyhbond_nbd_refined0.133
r_ncsr_local_group_10.076
r_symmetry_nbtor_other0.06
r_chiral_restr0.052
r_bond_other_d0.036
r_gen_planes_other0.005
r_bond_refined_d0.004
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5692
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms102

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing