7QLQ

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NAD, AND DIMETHOXYPHENYL ACETAMIDE


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.5295.150.1 M Bis-tris pH 5.5; 20 % (w/v) PEG 6000; 0.2 M NaF
Crystal Properties
Matthews coefficientSolvent content
2.1743.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.291α = 90
b = 85.455β = 90
c = 137.226γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.9762MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.656.021000.0820.9958.313.82290948.805
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.720.7390.5222.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM2.656.0222846110499.9430.1890.18730.233153.161
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.7260.1760.55
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.025
r_dihedral_angle_4_deg16.746
r_dihedral_angle_3_deg14.532
r_dihedral_angle_1_deg7.336
r_lrange_it4.176
r_lrange_other4.176
r_scangle_it2.663
r_scangle_other2.663
r_mcangle_it2.566
r_mcangle_other2.565
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.025
r_dihedral_angle_4_deg16.746
r_dihedral_angle_3_deg14.532
r_dihedral_angle_1_deg7.336
r_lrange_it4.176
r_lrange_other4.176
r_scangle_it2.663
r_scangle_other2.663
r_mcangle_it2.566
r_mcangle_other2.565
r_angle_other_deg2.32
r_scbond_it1.636
r_scbond_other1.636
r_mcbond_it1.602
r_mcbond_other1.601
r_angle_refined_deg1.274
r_symmetry_nbd_refined0.281
r_nbd_other0.258
r_symmetry_nbd_other0.212
r_nbd_refined0.178
r_symmetry_xyhbond_nbd_refined0.178
r_nbtor_refined0.144
r_xyhbond_nbd_refined0.126
r_ncsr_local_group_10.066
r_symmetry_nbtor_other0.061
r_chiral_restr0.05
r_bond_other_d0.036
r_bond_refined_d0.004
r_gen_planes_refined0.004
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5688
Nucleic Acid Atoms
Solvent Atoms54
Heterogen Atoms116

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
Aimlessdata scaling
REFMACphasing