7QLG

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT L259V COMPLEXED WITH FE, NADH, AND GLYCEROL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RRM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5295.1550.64mM Sodium acetate trihydrate, pH 4.5, 15%w/v PEG 3350, 200mM Sodium Formate
Crystal Properties
Matthews coefficientSolvent content
2.4349.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.78α = 90
b = 55.36β = 103.67
c = 107.69γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2021-05-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9999DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1251.66198.90.1530.9717.43.145370418.366
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0599.20.7520.4142.43.25

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1RRM251.66153690260298.780.1880.18620.227120.391
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.601-1.0581.5381.411
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.93
r_dihedral_angle_4_deg15.334
r_dihedral_angle_3_deg13.688
r_dihedral_angle_1_deg7.366
r_lrange_it3.638
r_lrange_other3.637
r_scangle_it2.706
r_scangle_other2.705
r_mcangle_it1.664
r_mcangle_other1.664
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.93
r_dihedral_angle_4_deg15.334
r_dihedral_angle_3_deg13.688
r_dihedral_angle_1_deg7.366
r_lrange_it3.638
r_lrange_other3.637
r_scangle_it2.706
r_scangle_other2.705
r_mcangle_it1.664
r_mcangle_other1.664
r_scbond_it1.656
r_scbond_other1.656
r_angle_refined_deg1.382
r_angle_other_deg1.265
r_mcbond_it1.046
r_mcbond_other1.046
r_symmetry_nbd_refined0.295
r_symmetry_xyhbond_nbd_refined0.227
r_nbd_other0.196
r_nbd_refined0.194
r_symmetry_nbd_other0.173
r_nbtor_refined0.148
r_xyhbond_nbd_refined0.13
r_symmetry_nbtor_other0.077
r_chiral_restr0.066
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5692
Nucleic Acid Atoms
Solvent Atoms241
Heterogen Atoms108

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing