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Beta-lactoglobulin mutant FAW (I56F/L39A/M107W) in complex with desipramine (FAW-DSM#3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.40 M (NH4)2SO4, 0.5 M Tris-HCl pH 8.5, desipramine
Crystal Properties Matthews coefficient Solvent content 2.1 41.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.298 α = 90 b = 66.298 β = 90 c = 60.63 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91840 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 41.69 99.9 0.051 1 23.24 10.3 22796
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.64 99.4 1.022 0.087 1.98 9.11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 1.55 41.69 22796 1000 99.917 0.199 0.1971 0.2062 0.2337 0.2357 29.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.512 0.256 0.512 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.606 r_dihedral_angle_3_deg 14.175 r_dihedral_angle_1_deg 6.88 r_lrange_it 6.169 r_lrange_other 6.165 r_scangle_other 3.658 r_scangle_it 3.639 r_dihedral_angle_4_deg 3.015 r_mcangle_it 2.659 r_mcangle_other 2.657
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.606 r_dihedral_angle_3_deg 14.175 r_dihedral_angle_1_deg 6.88 r_lrange_it 6.169 r_lrange_other 6.165 r_scangle_other 3.658 r_scangle_it 3.639 r_dihedral_angle_4_deg 3.015 r_mcangle_it 2.659 r_mcangle_other 2.657 r_scbond_other 2.32 r_scbond_it 2.309 r_mcbond_other 1.633 r_mcbond_it 1.632 r_angle_refined_deg 1.629 r_angle_other_deg 1.385 r_nbd_other 0.202 r_nbd_refined 0.196 r_symmetry_nbd_other 0.196 r_symmetry_nbd_refined 0.183 r_symmetry_xyhbond_nbd_refined 0.165 r_nbtor_refined 0.164 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.081 r_symmetry_nbtor_other 0.079 r_symmetry_xyhbond_nbd_other 0.032 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1254 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing