7PWJ

dUTPase from human in complex with Stl

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6H49
experimental model	PDB	1Q5U

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	1.6M ammonium sulphate and 1M lithium sulphate.

Crystal Properties
Matthews coefficient	Solvent content
3.33	63.02

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.72	α = 90
b = 81.797	β = 90
c = 198.398	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	DECTRIS EIGER2 X 9M		2019-11-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.99186	Diamond	I24

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.944	99.2	98.48	0.999	18.9	12.9		92354

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.944	1.995			0.897

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6H49, 1Q5U	1.944	99.199	92311	4665	98.495	0.217	0.21659	0.21424	0.26191	48.965

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.944			-1.866		-3.078

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.022
r_dihedral_angle_4_deg	17.653
r_dihedral_angle_3_deg	17.444
r_lrange_other	7.786
r_lrange_it	7.785
r_dihedral_angle_1_deg	6.718
r_mcangle_it	5.641
r_mcangle_other	5.641
r_scangle_it	5.589
r_scangle_other	5.589
r_scbond_it	3.932
r_scbond_other	3.932
r_mcbond_it	3.921
r_mcbond_other	3.921
r_angle_refined_deg	1.485
r_angle_other_deg	1.338
r_symmetry_xyhbond_nbd_refined	0.238
r_nbd_other	0.21
r_nbd_refined	0.198
r_symmetry_nbd_other	0.195
r_nbtor_refined	0.171
r_xyhbond_nbd_refined	0.161
r_symmetry_nbd_refined	0.149
r_symmetry_nbtor_other	0.084
r_symmetry_xyhbond_nbd_other	0.078
r_chiral_restr	0.068
r_xyhbond_nbd_other	0.034
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6555
Nucleic Acid Atoms
Solvent Atoms	315
Heterogen Atoms	146

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing