7PWJ | pdb_00007pwj

dUTPase from human in complex with Stl

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth DDD]	SCOP2B Superfamily	dUTPase-like	8041064	3001957	SCOP2B (2022-06-29)
C [auth BBB]	SCOP2B Superfamily	dUTPase-like	8041064	3001957	SCOP2B (2022-06-29)
B [auth AAA]	SCOP2B Superfamily	dUTPase-like	8041064	3001957	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth DDD]	tRNA-synt_2	e7pwjDDD1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: tRNA-synt_2	ECOD (v294.2)
C [auth BBB]	tRNA-synt_2	e7pwjBBB1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: tRNA-synt_2	ECOD (v294.2)
B [auth AAA]	tRNA-synt_2	e7pwjAAA1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: tRNA-synt_2	ECOD (v294.2)
F [auth FFF]	tRNA-synt_2	e7pwjFFF1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: tRNA-synt_2	ECOD (v294.2)
E [auth EEE]	tRNA-synt_2	e7pwjEEE1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: tRNA-synt_2	ECOD (v294.2)
A [auth CCC]	tRNA-synt_2	e7pwjCCC1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: tRNA-synt_2	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth AAA], C [auth BBB], D [auth DDD]	PF00692	dUTPase (dUTPase)	dUTPase	dUTPase hydrolyses dUTP to dUMP and pyrophosphate.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth AAA], C [auth BBB], D [auth DDD]	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding protein binding signaling receptor binding peroxisome proliferator activated receptor binding molecular function inhibitor activity molecular function regulator activity signaling receptor inhibitor activity signaling receptor regulator activity pyrimidine deoxyribonucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding protein binding signaling receptor binding peroxisome proliferator activated receptor binding molecular function inhibitor activity molecular function regulator activity signaling receptor inhibitor activity signaling receptor regulator activity pyrimidine deoxyribonucleotide binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding pyrimidine nucleotide binding pyrophosphatase activity nucleoside triphosphate diphosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides dUTP diphosphatase activity hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity RNA binding nucleic acid binding identical protein binding	developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development regulation of biological process regulation of cellular process regulation of cellular component organization protein-containing complex organization biological regulation developmental process multicellular organism development multicellular organismal process hepaticobiliary system development gland development animal organ development anatomical structure development liver development system development regulation of biological process regulation of cellular process regulation of cellular component organization protein-containing complex organization biological regulation regulation of cellular component biogenesis cellular component biogenesis cellular component organization regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis nucleobase-containing compound metabolic process DNA replication metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process pyrimidine deoxyribonucleotide metabolic process deoxyribose phosphate biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process pyrimidine deoxyribonucleoside monophosphate metabolic process pyrimidine deoxyribonucleotide biosynthetic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process deoxyribonucleoside monophosphate biosynthetic process small molecule metabolic process pyrimidine deoxyribonucleoside monophosphate biosynthetic process pyrimidine-containing compound biosynthetic process phosphorus metabolic process nucleoside monophosphate metabolic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process pyrimidine nucleoside monophosphate metabolic process pyrimidine-containing compound metabolic process 2'-deoxyribonucleotide metabolic process 2'-deoxyribonucleotide biosynthetic process nucleobase-containing compound biosynthetic process nucleotide metabolic process dUMP biosynthetic process nucleoside monophosphate biosynthetic process dUMP metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process pyrimidine nucleoside monophosphate biosynthetic process pyrimidine nucleotide biosynthetic process dTMP metabolic process dTMP biosynthetic process pyrimidine deoxyribonucleotide catabolic process catabolic process nucleoside triphosphate catabolic process pyrimidine-containing compound catabolic process dUTP metabolic process organophosphate catabolic process pyrimidine nucleoside triphosphate catabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process pyrimidine nucleotide catabolic process pyrimidine deoxyribonucleoside triphosphate metabolic process dUTP catabolic process nucleotide catabolic process pyrimidine deoxyribonucleoside triphosphate catabolic process carbohydrate derivative catabolic process pyrimidine nucleoside triphosphate metabolic process nucleobase-containing compound catabolic process nucleoside triphosphate metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A [auth CCC], E [auth EEE], F [auth FFF]	Orf20	DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth AAA], C [auth BBB], D [auth DDD]	IPR008181	Deoxyuridine triphosphate nucleotidohydrolase	Family
B [auth AAA], C [auth BBB], D [auth DDD]	IPR033704	dUTPase, trimeric	Domain
B [auth AAA], C [auth BBB], D [auth DDD]	IPR036157	dUTPase-like superfamily	Homologous Superfamily
B [auth AAA], C [auth BBB], D [auth DDD]	IPR029054	dUTPase-like	Domain
A [auth CCC], E [auth EEE], F [auth FFF]	IPR001387	Cro/C1-type, helix-turn-helix domain	Domain
A [auth CCC], E [auth EEE], F [auth FFF]	IPR010982	Lambda repressor-like, DNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth AAA], C [auth BBB], D [auth DDD]	: P33316	gastric carcinoma malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma thoracic aortic aneurysm lung cancer medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm tuberculosis lymphoplasmacytic lymphoma nasopharyngeal carcinoma pancreatic ductal adenocarcinoma plasma cell myeloma ulcerative colitis

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.