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Structure of chloride soak form of ArrX from Chrysiogenes arsenatis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6X6B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 0.2 M lithium chloride, 0.1 M Tris pH 8.5, 27% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.91 35.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.896 α = 90 b = 54.477 β = 90 c = 90.844 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95372 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 46.72 99 1 20 20 20389
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.97 0.857
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6X6B 1.925 46.72 20342 1002 98.983 0.171 0.1685 0.1812 0.2135 0.2227 39.424
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.5 4.997 -2.497
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.82 r_dihedral_angle_3_deg 15.171 r_dihedral_angle_4_deg 13.763 r_lrange_it 8.371 r_lrange_other 8.335 r_scangle_other 6.343 r_scangle_it 6.335 r_dihedral_angle_1_deg 5.792 r_scbond_it 4.173 r_scbond_other 4.171
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.82 r_dihedral_angle_3_deg 15.171 r_dihedral_angle_4_deg 13.763 r_lrange_it 8.371 r_lrange_other 8.335 r_scangle_other 6.343 r_scangle_it 6.335 r_dihedral_angle_1_deg 5.792 r_scbond_it 4.173 r_scbond_other 4.171 r_mcangle_it 3.603 r_mcangle_other 3.602 r_mcbond_it 2.679 r_mcbond_other 2.676 r_angle_refined_deg 1.483 r_angle_other_deg 1.326 r_symmetry_xyhbond_nbd_refined 0.544 r_symmetry_nbd_refined 0.215 r_xyhbond_nbd_refined 0.213 r_nbd_other 0.207 r_nbd_refined 0.196 r_symmetry_nbd_other 0.181 r_nbtor_refined 0.17 r_symmetry_xyhbond_nbd_other 0.136 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2023 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing