7BF9

Mutant M107L of recombinant bovine beta-lactoglobulin in complex with tetracaine


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1BSY 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82931,34 M tri-sodium citrate in 0.5 Tris o pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.4850.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.017α = 90
b = 53.017β = 90
c = 111.561γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAGILENT ATLAS CCD2014-12-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEAgilent SuperNova1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.814.73990.0350.0430.0250.99913.82.617194
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8499.90.4280.5970.4140.3512.22

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1BSY1.814.15717190105498.3410.1860.186220.18370.2232RANDOM25.452
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.012-0.006-0.0120.039
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.307
r_dihedral_angle_3_deg14.618
r_dihedral_angle_4_deg7.646
r_dihedral_angle_1_deg7.26
r_lrange_it5.783
r_lrange_other5.496
r_scangle_it3.019
r_scangle_other3.017
r_mcangle_it2.28
r_mcangle_other2.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.307
r_dihedral_angle_3_deg14.618
r_dihedral_angle_4_deg7.646
r_dihedral_angle_1_deg7.26
r_lrange_it5.783
r_lrange_other5.496
r_scangle_it3.019
r_scangle_other3.017
r_mcangle_it2.28
r_mcangle_other2.28
r_scbond_it1.834
r_scbond_other1.832
r_angle_refined_deg1.602
r_mcbond_it1.391
r_mcbond_other1.387
r_angle_other_deg1.377
r_nbd_other0.211
r_nbd_refined0.196
r_symmetry_nbd_other0.183
r_symmetry_nbd_refined0.17
r_xyhbond_nbd_refined0.165
r_nbtor_refined0.164
r_symmetry_xyhbond_nbd_refined0.148
r_symmetry_nbtor_other0.083
r_chiral_restr0.076
r_symmetry_xyhbond_nbd_other0.03
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1196
Nucleic Acid Atoms
Solvent Atoms158
Heterogen Atoms19

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CrysalisProdata reduction
PHASERphasing