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Mutant M107L of recombinant bovine beta-lactoglobulin in complex with tetracaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 1,34 M tri-sodium citrate in 0.5 Tris o pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.48 50.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.017 α = 90 b = 53.017 β = 90 c = 111.561 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2014-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 14.73 99 0.035 0.043 0.025 0.999 13.8 2.6 17194
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.9 0.428 0.597 0.414 0.351 2.2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BSY 1.8 14.157 17190 1054 98.341 0.186 0.18622 0.1837 0.1922 0.2232 0.2303 RANDOM 25.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.012 -0.006 -0.012 0.039
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.307 r_dihedral_angle_3_deg 14.618 r_dihedral_angle_4_deg 7.646 r_dihedral_angle_1_deg 7.26 r_lrange_it 5.783 r_lrange_other 5.496 r_scangle_it 3.019 r_scangle_other 3.017 r_mcangle_it 2.28 r_mcangle_other 2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.307 r_dihedral_angle_3_deg 14.618 r_dihedral_angle_4_deg 7.646 r_dihedral_angle_1_deg 7.26 r_lrange_it 5.783 r_lrange_other 5.496 r_scangle_it 3.019 r_scangle_other 3.017 r_mcangle_it 2.28 r_mcangle_other 2.28 r_scbond_it 1.834 r_scbond_other 1.832 r_angle_refined_deg 1.602 r_mcbond_it 1.391 r_mcbond_other 1.387 r_angle_other_deg 1.377 r_nbd_other 0.211 r_nbd_refined 0.196 r_symmetry_nbd_other 0.183 r_symmetry_nbd_refined 0.17 r_xyhbond_nbd_refined 0.165 r_nbtor_refined 0.164 r_symmetry_xyhbond_nbd_refined 0.148 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.076 r_symmetry_xyhbond_nbd_other 0.03 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1196 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 19
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction CrysalisPro data reduction PHASER phasing