7AWX

Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 55


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529340% PEG3350 0.1 M HEPES-NaOH pH 7.5 0.2M ammonium thiocyanate
Crystal Properties
Matthews coefficientSolvent content
2.2545.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.126α = 90
b = 64.621β = 90
c = 77.979γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-10-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.242.1799.50.080.0940.050.997106.413332
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.271.1221.3490.740.8986

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4tw72.242.0041328965599.3050.2360.23270.30353.947
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-6.4751.0835.391
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.438
r_dihedral_angle_4_deg19.58
r_dihedral_angle_3_deg16.45
r_dihedral_angle_1_deg8.833
r_lrange_it7.949
r_lrange_other7.949
r_mcangle_it6.156
r_mcangle_other6.155
r_scangle_it5.391
r_scangle_other5.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.438
r_dihedral_angle_4_deg19.58
r_dihedral_angle_3_deg16.45
r_dihedral_angle_1_deg8.833
r_lrange_it7.949
r_lrange_other7.949
r_mcangle_it6.156
r_mcangle_other6.155
r_scangle_it5.391
r_scangle_other5.39
r_mcbond_it4.119
r_mcbond_other4.112
r_scbond_it3.627
r_scbond_other3.625
r_angle_refined_deg1.686
r_chiral_restr_other1.609
r_angle_other_deg1.555
r_nbd_other0.234
r_symmetry_nbd_refined0.199
r_nbd_refined0.196
r_symmetry_nbd_other0.186
r_symmetry_xyhbond_nbd_refined0.184
r_nbtor_refined0.175
r_xyhbond_nbd_refined0.123
r_symmetry_nbtor_other0.079
r_chiral_restr0.049
r_bond_refined_d0.009
r_bond_other_d0.006
r_gen_planes_refined0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1807
Nucleic Acid Atoms
Solvent Atoms11
Heterogen Atoms102

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata reduction
XDSdata collection
Aimlessdata scaling
PHASERphasing