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Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 55
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 40% PEG3350
0.1 M HEPES-NaOH pH 7.5
0.2M ammonium thiocyanate
Crystal Properties Matthews coefficient Solvent content 2.25 45.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.126 α = 90 b = 64.621 β = 90 c = 77.979 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 42.17 99.5 0.08 0.094 0.05 0.997 10 6.4 13332
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 1.122 1.349 0.74 0.898 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4tw7 2.2 42.004 13289 655 99.305 0.236 0.2327 0.2282 0.303 0.2995 53.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.475 1.083 5.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.438 r_dihedral_angle_4_deg 19.58 r_dihedral_angle_3_deg 16.45 r_dihedral_angle_1_deg 8.833 r_lrange_it 7.949 r_lrange_other 7.949 r_mcangle_it 6.156 r_mcangle_other 6.155 r_scangle_it 5.391 r_scangle_other 5.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.438 r_dihedral_angle_4_deg 19.58 r_dihedral_angle_3_deg 16.45 r_dihedral_angle_1_deg 8.833 r_lrange_it 7.949 r_lrange_other 7.949 r_mcangle_it 6.156 r_mcangle_other 6.155 r_scangle_it 5.391 r_scangle_other 5.39 r_mcbond_it 4.119 r_mcbond_other 4.112 r_scbond_it 3.627 r_scbond_other 3.625 r_angle_refined_deg 1.686 r_chiral_restr_other 1.609 r_angle_other_deg 1.555 r_nbd_other 0.234 r_symmetry_nbd_refined 0.199 r_nbd_refined 0.196 r_symmetry_nbd_other 0.186 r_symmetry_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.123 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.049 r_bond_refined_d 0.009 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1807 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement Aimless data reduction XDS data collection Aimless data scaling PHASER phasing