7AJK

Crystal structure of CRYI-B Rac1 complex


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4GZL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2798% v/v PEG4,000 0.1M Tris pH 8.5 0.2M Sodium acetate
Crystal Properties
Matthews coefficientSolvent content
3.3763.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.87α = 90
b = 81.87β = 90
c = 355.87γ = 120
Symmetry
Space GroupP 62 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-02-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97624DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.159.38297.920.9918.710.613493
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.210.917

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4GZL3.159.3821349367297.8390.250.24860.281879.88
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.8970.4490.897-2.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.659
r_dihedral_angle_4_deg17.705
r_dihedral_angle_3_deg17.265
r_lrange_it14.802
r_lrange_other14.801
r_scangle_it11.188
r_scangle_other11.186
r_mcangle_other10.795
r_mcangle_it10.794
r_scbond_it7.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.659
r_dihedral_angle_4_deg17.705
r_dihedral_angle_3_deg17.265
r_lrange_it14.802
r_lrange_other14.801
r_scangle_it11.188
r_scangle_other11.186
r_mcangle_other10.795
r_mcangle_it10.794
r_scbond_it7.44
r_scbond_other7.438
r_mcbond_other7.399
r_mcbond_it7.398
r_dihedral_angle_1_deg4.273
r_angle_other_deg1.128
r_angle_refined_deg1.087
r_symmetry_nbd_refined0.499
r_chiral_restr_other0.395
r_symmetry_xyhbond_nbd_refined0.277
r_nbd_other0.275
r_symmetry_nbd_other0.228
r_nbd_refined0.209
r_nbtor_refined0.16
r_xyhbond_nbd_refined0.157
r_symmetry_nbtor_other0.081
r_metal_ion_refined0.067
r_chiral_restr0.042
r_symmetry_xyhbond_nbd_other0.022
r_bond_refined_d0.002
r_gen_planes_refined0.002
r_gen_planes_other0.001
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3567
Nucleic Acid Atoms
Solvent Atoms12
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
DIALSdata reduction
DIALSdata scaling
MOLREPphasing