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Human serum albumin (HSA) crystallized in the presence of yttrium (III) chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BXI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 2mM yttrium chloride
Crystal Properties Matthews coefficient Solvent content 2.69 54.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.27 α = 90 b = 71.93 β = 90 c = 180.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2009-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.7 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 40 99.5 0.999 16.8 16.2 35814 75.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.82 93.8 0.641
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2BXI 2.75 30.002 19242 1540 99.319 0.243 0.2385 0.2398 0.2946 0.2913 79.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.112 5.641 -4.529
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.701 r_dihedral_angle_4_deg 21.225 r_dihedral_angle_3_deg 21.198 r_lrange_other 13.752 r_lrange_it 13.751 r_scangle_it 8.537 r_scangle_other 8.536 r_mcangle_it 8.288 r_mcangle_other 8.282 r_scbond_it 5.547
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.701 r_dihedral_angle_4_deg 21.225 r_dihedral_angle_3_deg 21.198 r_lrange_other 13.752 r_lrange_it 13.751 r_scangle_it 8.537 r_scangle_other 8.536 r_mcangle_it 8.288 r_mcangle_other 8.282 r_scbond_it 5.547 r_scbond_other 5.546 r_mcbond_it 5.529 r_mcbond_other 5.517 r_dihedral_angle_1_deg 4.069 r_angle_refined_deg 1.203 r_angle_other_deg 1.098 r_symmetry_nbd_refined 0.434 r_metal_ion_refined 0.388 r_symmetry_metal_ion_refined 0.223 r_nbd_refined 0.2 r_symmetry_nbd_other 0.188 r_nbd_other 0.169 r_xyhbond_nbd_refined 0.16 r_nbtor_refined 0.155 r_symmetry_xyhbond_nbd_refined 0.122 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.043 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4535 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing