7A9C

Human serum albumin (HSA) crystallized in the presence of yttrium (III) chloride


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BXI 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE2932mM yttrium chloride
Crystal Properties
Matthews coefficientSolvent content
2.6954.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.27α = 90
b = 71.93β = 90
c = 180.13γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2009-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.7SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.754099.50.99916.816.23581475.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.752.8293.80.641

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2BXI2.7530.00219242154099.3190.2430.23850.294679.473
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.1125.641-4.529
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.701
r_dihedral_angle_4_deg21.225
r_dihedral_angle_3_deg21.198
r_lrange_other13.752
r_lrange_it13.751
r_scangle_it8.537
r_scangle_other8.536
r_mcangle_it8.288
r_mcangle_other8.282
r_scbond_it5.547
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.701
r_dihedral_angle_4_deg21.225
r_dihedral_angle_3_deg21.198
r_lrange_other13.752
r_lrange_it13.751
r_scangle_it8.537
r_scangle_other8.536
r_mcangle_it8.288
r_mcangle_other8.282
r_scbond_it5.547
r_scbond_other5.546
r_mcbond_it5.529
r_mcbond_other5.517
r_dihedral_angle_1_deg4.069
r_angle_refined_deg1.203
r_angle_other_deg1.098
r_symmetry_nbd_refined0.434
r_metal_ion_refined0.388
r_symmetry_metal_ion_refined0.223
r_nbd_refined0.2
r_symmetry_nbd_other0.188
r_nbd_other0.169
r_xyhbond_nbd_refined0.16
r_nbtor_refined0.155
r_symmetry_xyhbond_nbd_refined0.122
r_symmetry_nbtor_other0.081
r_chiral_restr0.043
r_gen_planes_refined0.003
r_bond_refined_d0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4535
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing