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Crystal Structure of Ljungan virus 4 2A2 protein I222 crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ZTW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.25 277 0.1M Na acetate pH 5.25
10% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.31 46.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.513 α = 90 b = 59.562 β = 90 c = 72.827 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00003 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 46.11 99.6 0.041 0.037 0.999 11.4 3.3 14774
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.71 0.638 0.467 0.642
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7ZTW 1.68 46.106 14772 760 99.448 0.212 0.2092 0.2193 0.2558 0.2683 31.593
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.503 -0.45 -0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.092 r_dihedral_angle_2_deg 15.86 r_dihedral_angle_3_deg 11.95 r_lrange_other 9.731 r_lrange_it 9.713 r_scangle_it 9.188 r_scangle_other 9.181 r_dihedral_angle_1_deg 7.159 r_scbond_it 6.887 r_scbond_other 6.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.092 r_dihedral_angle_2_deg 15.86 r_dihedral_angle_3_deg 11.95 r_lrange_other 9.731 r_lrange_it 9.713 r_scangle_it 9.188 r_scangle_other 9.181 r_dihedral_angle_1_deg 7.159 r_scbond_it 6.887 r_scbond_other 6.88 r_mcangle_other 6.855 r_mcangle_it 6.781 r_mcbond_it 5.407 r_mcbond_other 5.367 r_angle_refined_deg 1.384 r_angle_other_deg 0.483 r_nbd_refined 0.222 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.183 r_symmetry_xyhbond_nbd_refined 0.177 r_nbd_other 0.161 r_xyhbond_nbd_refined 0.138 r_symmetry_nbd_refined 0.118 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.064 r_chiral_restr_other 0.046 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 927 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing