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Artificial Unspecific Peroxygenase expressed in Pichia pastoris at 1.21 Angstrom resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FUJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.15 M KSCN, 25% (w/v) PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.75 55.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.851 α = 90 b = 74.168 β = 90 c = 154.535 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS PILATUS 6M-F 2019-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.915870 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 77.27 99.9 0.04 0.02 1 23.6 7.7 89172 11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.21 1.23 100 0.43 0.28 0.92 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5FUJ 1.21 77.27 84702 4405 99.91 0.1494 0.1485 0.1532 0.165 0.1673 RANDOM 14.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -0.08 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.967 r_dihedral_angle_4_deg 18.988 r_dihedral_angle_3_deg 11.741 r_dihedral_angle_1_deg 6.794 r_angle_refined_deg 2.151 r_angle_other_deg 1.625 r_chiral_restr 0.124 r_bond_refined_d 0.019 r_gen_planes_refined 0.016 r_gen_planes_other 0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.967 r_dihedral_angle_4_deg 18.988 r_dihedral_angle_3_deg 11.741 r_dihedral_angle_1_deg 6.794 r_angle_refined_deg 2.151 r_angle_other_deg 1.625 r_chiral_restr 0.124 r_bond_refined_d 0.019 r_gen_planes_refined 0.016 r_gen_planes_other 0.015 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1802 Nucleic Acid Atoms Solvent Atoms 379 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing