☰ Navigation Tabs
Inactive D62N mutant of BT1760 Endo-acting levanase from Bacteroides thetaiotaomicron VPI-5482
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 200 mM ammonium sulfate, 100 mM mes pH 6.5 and 30% PEG 5000 MME
Crystal Properties Matthews coefficient Solvent content 3.48 64.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.5 α = 90 b = 175.5 β = 90 c = 214.53 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97630 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 73.71 99.6 0.16 0.188 0.097 0.995 9.4 6.9 73764
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.35 0.549 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.3 73.708 73747 3652 99.557 0.218 0.2157 0.2157 0.2537 0.2536 42.585
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.169 2.169 -4.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.497 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_2_deg 9.653 r_dihedral_angle_1_deg 7.81 r_lrange_it 7.36 r_lrange_other 7.293 r_scangle_it 5.507 r_scangle_other 5.026 r_mcangle_other 4.496 r_mcangle_it 4.495
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.497 r_dihedral_angle_3_deg 14.85 r_dihedral_angle_2_deg 9.653 r_dihedral_angle_1_deg 7.81 r_lrange_it 7.36 r_lrange_other 7.293 r_scangle_it 5.507 r_scangle_other 5.026 r_mcangle_other 4.496 r_mcangle_it 4.495 r_scbond_it 3.748 r_scbond_other 3.407 r_mcbond_it 3.023 r_mcbond_other 3.022 r_angle_refined_deg 1.507 r_angle_other_deg 0.472 r_symmetry_nbd_refined 0.304 r_symmetry_nbd_other 0.197 r_nbd_refined 0.194 r_nbtor_refined 0.181 r_nbd_other 0.159 r_xyhbond_nbd_refined 0.13 r_symmetry_nbtor_other 0.089 r_ncsr_local_group_1 0.082 r_chiral_restr 0.077 r_symmetry_xyhbond_nbd_refined 0.045 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7800 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 230
Software Software Software Name Purpose REFMAC refinement REFMAC refinement xia2 data reduction XDS data reduction Aimless data scaling CRANK2 phasing Coot model building MolProbity model building