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Mutant L39Y-L58F of recombinant bovine beta-lactoglobulin in complex with endogenous fatty acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.4 M in 0.5 M Tris-HCl, pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.48 50.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.245 α = 90 b = 53.245 β = 90 c = 111.21 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2018-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54056
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 15.21 99.6 0.113 0.122 0.998 8.9 6.7 11150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 99.7 1.046 1.181 0.631 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 2.1 15.21 11128 1052 99.357 0.196 0.1912 0.1991 0.2374 0.2376 38.259
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.397 0.198 0.397 -1.287
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.708 r_dihedral_angle_3_deg 17.725 r_dihedral_angle_4_deg 12.936 r_dihedral_angle_1_deg 6.98 r_lrange_it 6.147 r_lrange_other 6.125 r_scangle_it 4.041 r_scangle_other 4.023 r_mcangle_it 3.17 r_mcangle_other 3.169
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.708 r_dihedral_angle_3_deg 17.725 r_dihedral_angle_4_deg 12.936 r_dihedral_angle_1_deg 6.98 r_lrange_it 6.147 r_lrange_other 6.125 r_scangle_it 4.041 r_scangle_other 4.023 r_mcangle_it 3.17 r_mcangle_other 3.169 r_scbond_it 2.477 r_scbond_other 2.454 r_mcbond_it 2.013 r_mcbond_other 2.003 r_angle_refined_deg 1.629 r_angle_other_deg 1.248 r_symmetry_nbd_refined 0.234 r_nbd_other 0.231 r_nbd_refined 0.2 r_symmetry_xyhbond_nbd_refined 0.193 r_symmetry_nbd_other 0.191 r_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.161 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1216 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling PHASER phasing