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SARS CoV Spike protein, Closed C3 conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6ACC
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.474 f_angle_d 1.264 f_chiral_restr 0.057 f_bond_d 0.015 f_plane_restr 0.007
Sample SARS CoV Spike protein, Closed conformation, C3 symmetry
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 534609 Reported Resolution (Å) 2.48 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6ACC) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 62.65
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS TALOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU MODEL FITTING Coot MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION RELION RECONSTRUCTION RELION MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1724689