☰ Navigation Tabs
Crystal structure of the human MGC45594 gene product in complex with celecoxib.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C0C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.5M NA MALONATE pH 7.0,
0.25W/V JEFFAMINE ED 2001 pH 7.0
HEPES pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.46 50.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.83 α = 93.86 b = 51.41 β = 91.48 c = 75.88 γ = 101.29
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 16.76 85.8 0.052 8.3 1.8 101296
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.89 0.226
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2C0C 1.79 16.76 55934 1731 85.782 0.186 0.1847 0.2337 0.2296 27.314
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.469 -1.735 0.488 4.797 0.202 -3.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.341 r_dihedral_angle_4_deg 19.634 r_dihedral_angle_3_deg 13.754 r_dihedral_angle_other_2_deg 8.439 r_dihedral_angle_1_deg 6.995 r_lrange_it 5.639 r_lrange_other 5.634 r_scangle_it 3.988 r_scangle_other 3.988 r_mcangle_it 2.909
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.341 r_dihedral_angle_4_deg 19.634 r_dihedral_angle_3_deg 13.754 r_dihedral_angle_other_2_deg 8.439 r_dihedral_angle_1_deg 6.995 r_lrange_it 5.639 r_lrange_other 5.634 r_scangle_it 3.988 r_scangle_other 3.988 r_mcangle_it 2.909 r_mcangle_other 2.908 r_scbond_it 2.54 r_scbond_other 2.54 r_chiral_restr_other 1.989 r_mcbond_it 1.911 r_mcbond_other 1.911 r_angle_refined_deg 1.58 r_angle_other_deg 1.319 r_symmetry_nbd_refined 0.302 r_symmetry_xyhbond_nbd_refined 0.294 r_nbd_other 0.207 r_nbd_refined 0.199 r_symmetry_nbd_other 0.172 r_nbtor_refined 0.158 r_xyhbond_nbd_refined 0.149 r_symmetry_nbtor_other 0.078 r_symmetry_xyhbond_nbd_other 0.072 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5074 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 148
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing