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Mutant L39Y-L58F of recombinant bovine beta-lactoglobulin in complex with pramocaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 2.2M ammonium sulfate, 0.5 M Tris-HCl, pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.51 50.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.551 α = 90 b = 53.551 β = 90 c = 110.866 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2018-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54056
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 14.99 99.6 0.084 0.091 0.998 13.6 6.3 11262
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 1.373 1.551 0.654 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 2.1 14.99 11231 1057 99.442 0.227 0.2231 0.2689 0.2643 45.685
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.264 0.132 0.264 -0.855
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.85 r_dihedral_angle_3_deg 17.221 r_dihedral_angle_1_deg 7.361 r_dihedral_angle_4_deg 7.334 r_lrange_it 5.617 r_lrange_other 5.607 r_scangle_it 3.098 r_scangle_other 3.075 r_mcangle_it 2.935 r_mcangle_other 2.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.85 r_dihedral_angle_3_deg 17.221 r_dihedral_angle_1_deg 7.361 r_dihedral_angle_4_deg 7.334 r_lrange_it 5.617 r_lrange_other 5.607 r_scangle_it 3.098 r_scangle_other 3.075 r_mcangle_it 2.935 r_mcangle_other 2.934 r_scbond_it 1.81 r_scbond_other 1.793 r_mcbond_other 1.748 r_mcbond_it 1.747 r_angle_refined_deg 1.419 r_angle_other_deg 1.166 r_nbd_other 0.22 r_symmetry_xyhbond_nbd_refined 0.22 r_symmetry_nbd_refined 0.196 r_nbd_refined 0.191 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.16 r_xyhbond_nbd_refined 0.138 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1217 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling PHASER phasing