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Crystal structure of the C-terminal domain of FusB, a TonB homologue
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GSK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 Tris pH 8.5, 8% PEG8000
Crystal Properties Matthews coefficient Solvent content 3.9 68.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.661 α = 90 b = 94.661 β = 90 c = 58.246 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 47.53 100 0.999 36.1 10.2 18033
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.14 0.899
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2gsk 2.08 47.53 17121 887 99.99 0.2131 0.21167 0.2181 0.23958 0.2469 RANDOM 60.833
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.19 -0.38 1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.954 r_dihedral_angle_4_deg 20.977 r_dihedral_angle_3_deg 16.26 r_long_range_B_refined 11.288 r_long_range_B_other 11.284 r_scangle_other 9.101 r_dihedral_angle_1_deg 7.767 r_scbond_it 6.254 r_scbond_other 6.251 r_mcangle_it 5.604
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.954 r_dihedral_angle_4_deg 20.977 r_dihedral_angle_3_deg 16.26 r_long_range_B_refined 11.288 r_long_range_B_other 11.284 r_scangle_other 9.101 r_dihedral_angle_1_deg 7.767 r_scbond_it 6.254 r_scbond_other 6.251 r_mcangle_it 5.604 r_mcangle_other 5.601 r_mcbond_it 4.478 r_mcbond_other 4.478 r_angle_refined_deg 1.244 r_angle_other_deg 1.213 r_chiral_restr 0.052 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1359 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing