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FNIP family proteins from Cafeteria roenbergensis virus (CroV): leucine-rich repeats with novel structural features
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other homology model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1M Bis-TRIS pH 6.5, 10% PEG10,000, 0.2M Potassium Sodium Tartrate tetrahydrate.
Crystal Properties Matthews coefficient Solvent content 3.31 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.012 α = 90 b = 113.453 β = 90 c = 236.242 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 16M 2021-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.73 49.46 99.7 0.034 0.99 14.4 13.8 999128
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.73 2.79 95 0.788 0.44 1 13.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE homology model 2.732 49.439 72536 3577 99.662 0.222 0.2197 0.218 0.2666 0.2645 89.209
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.787 -9.174 -0.613
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.581 r_dihedral_angle_3_deg 13.268 r_dihedral_angle_4_deg 8.531 r_dihedral_angle_1_deg 6.271 r_lrange_it 4.991 r_lrange_other 4.957 r_angle_other_deg 1.249 r_mcangle_it 1.152 r_mcangle_other 1.152 r_angle_refined_deg 1.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.581 r_dihedral_angle_3_deg 13.268 r_dihedral_angle_4_deg 8.531 r_dihedral_angle_1_deg 6.271 r_lrange_it 4.991 r_lrange_other 4.957 r_angle_other_deg 1.249 r_mcangle_it 1.152 r_mcangle_other 1.152 r_angle_refined_deg 1.112 r_scangle_it 0.815 r_scangle_other 0.815 r_mcbond_it 0.638 r_mcbond_other 0.638 r_scbond_it 0.437 r_scbond_other 0.437 r_symmetry_nbd_refined 0.38 r_nbd_other 0.34 r_symmetry_xyhbond_nbd_refined 0.302 r_xyhbond_nbd_refined 0.217 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.17 r_nbd_refined 0.169 r_symmetry_xyhbond_nbd_other 0.077 r_symmetry_nbtor_other 0.072 r_xyhbond_nbd_other 0.063 r_chiral_restr 0.049 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14496 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing