7Z5H

human Zn MATCAP

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	0.1M HEPES-NaOH, 4.3M NaCl, 2 uM ZnCl2, pH 7

Crystal Properties
Matthews coefficient	Solvent content
2.6	52.7

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 55.646	α = 90
b = 88.067	β = 90.767
c = 165.581	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2020-04-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.280960	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.5	47.083	100	0.173	0.204	0.108	0.996	9.1	6.8		55542

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.5	2.57			1.727	2.038	1.073	0.56		7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7Z5G	2.5	47.083	55525	2762	99.914	0.233	0.2319	0.255	59.829

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.711		0.921	0.234		-0.969

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.13
r_dihedral_angle_3_deg	13.914
r_dihedral_angle_4_deg	13.768
r_dihedral_angle_1_deg	4.747
r_lrange_it	4.182
r_lrange_other	4.18
r_mcangle_it	2.225
r_mcangle_other	2.225
r_scangle_it	2.148
r_scangle_other	2.148
r_mcbond_it	1.284
r_mcbond_other	1.284
r_scbond_it	1.241
r_scbond_other	1.241
r_angle_refined_deg	0.978
r_angle_other_deg	0.964
r_symmetry_nbd_refined	0.226
r_nbd_other	0.219
r_nbd_refined	0.189
r_nbtor_refined	0.165
r_symmetry_nbd_other	0.159
r_xyhbond_nbd_refined	0.127
r_symmetry_xyhbond_nbd_refined	0.106
r_ncsr_local_group_1	0.083
r_ncsr_local_group_4	0.083
r_ncsr_local_group_5	0.082
r_ncsr_local_group_3	0.075
r_ncsr_local_group_2	0.074
r_symmetry_nbtor_other	0.071
r_ncsr_local_group_6	0.061
r_chiral_restr	0.055
r_bond_refined_d	0.006
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	10848
Nucleic Acid Atoms
Solvent Atoms	161
Heterogen Atoms	4

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
Coot	model building
MolProbity	model building