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Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UFS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293.15 0.1 M PIPES, pH 7.0, 0.1 M ammonium acetate, 2.5 M sodium formate
Crystal Properties Matthews coefficient Solvent content 4 69.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.479 α = 90 b = 109.479 β = 90 c = 137.781 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 94.81 96.8 0.074 0.051 0.994 7.4 2.9 33009
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.56 98.5 0.725 0.317 0.7 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5UFS 2.46 94.81 31272 1692 96.5 0.2177 0.2162 0.216 0.247 0.247 RANDOM 68.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.14 0.27 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.314 r_dihedral_angle_3_deg 21.404 r_dihedral_angle_4_deg 20.414 r_dihedral_angle_1_deg 7.281 r_angle_refined_deg 1.655 r_chiral_restr 0.13 r_gen_planes_refined 0.008 r_bond_refined_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4115 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling MOLREP phasing