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Crystal structure of anti-mPEG h15-2b Fab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L7I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% (w/v) PEG-6000, 1% (w/v) PEG-2000-MME, 0.15 M lithium sulfate monohydrate, and 0.1 M citric acid
Crystal Properties Matthews coefficient Solvent content 3 58.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.994 α = 90 b = 112.285 β = 90.58 c = 158.73 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2020-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 0.9732 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 30 98.5 0.058 24.77 4.8 131932
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.15 93.1 0.492 0.864 2.68 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1L7I 2.08 30 121859 6507 95.96 0.2126 0.2109 0.2166 0.245 0.2489 RANDOM 28.829
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.09 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_4_deg 18.071 r_dihedral_angle_3_deg 15.97 r_dihedral_angle_1_deg 7.357 r_angle_refined_deg 1.359 r_angle_other_deg 1.302 r_chiral_restr 0.048 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.966 r_dihedral_angle_4_deg 18.071 r_dihedral_angle_3_deg 15.97 r_dihedral_angle_1_deg 7.357 r_angle_refined_deg 1.359 r_angle_other_deg 1.302 r_chiral_restr 0.048 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12890 Nucleic Acid Atoms Solvent Atoms 692 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing