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The structure of TfCut S130A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZOA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 4 298 4% v/v PEG200; 0.8 M lithium sulfate; 0.1 M sodium acetate pH4.0
Crystal Properties Matthews coefficient Solvent content 2.64 53.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.414 α = 90 b = 91.414 β = 90 c = 247.696 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2021-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34138
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 39.99 99.9 0.0949 10.24 9.42 86890
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.47 99.8 0.513 2.06 4.47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5zoa 2.43 39.58 1.34 86890 3757 99.61 0.1773 0.1752 0.1758 0.2255 0.2247 19.2878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7976 Nucleic Acid Atoms Solvent Atoms 817 Heterogen Atoms 96
Software Software Software Name Purpose SADABS data scaling PHENIX refinement PDB_EXTRACT data extraction SAINT data reduction PHASER phasing