☰ Navigation Tabs
Anabolic ornithine carbamoyltransferases (OTCs) from Psychrobacter sp. PAMC 21119
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ORT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1M Sodium Acetate: HCl, pH 4.6, 1M Ammonium Citrate Dibasic
Crystal Properties Matthews coefficient Solvent content 2.61 52.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.61 α = 90 b = 129.61 β = 90 c = 75.2 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2021-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9795 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.76 100 1 25.9 20.9 36629
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 1.326 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1ort 2.2 29.76 36627 1852 99.94 0.185 0.1827 0.189 0.2352 0.2384 55.176
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.006 -0.003 -0.006 0.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.317 r_dihedral_angle_4_deg 18.408 r_dihedral_angle_3_deg 17.255 r_lrange_other 10.157 r_lrange_it 10.154 r_scangle_it 8.319 r_scangle_other 8.318 r_dihedral_angle_1_deg 6.47 r_mcangle_it 6.138 r_mcangle_other 6.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.317 r_dihedral_angle_4_deg 18.408 r_dihedral_angle_3_deg 17.255 r_lrange_other 10.157 r_lrange_it 10.154 r_scangle_it 8.319 r_scangle_other 8.318 r_dihedral_angle_1_deg 6.47 r_mcangle_it 6.138 r_mcangle_other 6.138 r_scbond_it 5.548 r_scbond_other 5.547 r_mcbond_it 4.475 r_mcbond_other 4.473 r_angle_refined_deg 1.596 r_angle_other_deg 1.297 r_symmetry_nbd_refined 0.218 r_nbd_refined 0.212 r_nbd_other 0.189 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.167 r_xyhbond_nbd_refined 0.161 r_symmetry_xyhbond_nbd_refined 0.153 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4687 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing