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Structure of the C-terminal head domain of the fowl adenovirus type 4 fiber 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IUN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 0.1M Na citrate tribasic dihydrate pH5.0, 30% PEG monomethyl ether 550
Crystal Properties Matthews coefficient Solvent content 2.42 49.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.6 α = 90 b = 116.6 β = 90 c = 116.6 γ = 90
Symmetry Space Group P 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 CCD MARMOSAIC 225 mm CCD 2021-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM02 0.9793 ESRF BM02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 47.65 100 0.128 27.1 75.7 33187
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 3.295
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2IUN 1.65 47.65 31537 1650 99.98 0.1379 0.1352 0.1897 0.2051 RANDOM 30.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.327 r_dihedral_angle_3_deg 12.475 r_dihedral_angle_1_deg 7.712 r_dihedral_angle_4_deg 6.413 r_rigid_bond_restr 1.573 r_angle_refined_deg 1.411 r_angle_other_deg 1.283 r_chiral_restr 0.062 r_bond_refined_d 0.006 r_gen_planes_refined 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.327 r_dihedral_angle_3_deg 12.475 r_dihedral_angle_1_deg 7.712 r_dihedral_angle_4_deg 6.413 r_rigid_bond_restr 1.573 r_angle_refined_deg 1.411 r_angle_other_deg 1.283 r_chiral_restr 0.062 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction autoPROC data reduction REFMAC phasing