☰ Navigation Tabs
Structure of a triple-helix region of human collagen type III from Trautec
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CUO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MIB pH5.0, 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 1.77 30.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.809 α = 90 b = 21.325 β = 93.651 c = 57.636 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2022-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.7749 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 28.76 99.6 0.037 35.9 6.4 14504
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 0.067
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2CUO 1.3 23.772 14497 764 99.547 0.14 0.1368 0.1433 0.194 0.1905 8.872
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.079 0.134 -1.114 1.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 13.366 r_dihedral_angle_3_deg 10.394 r_dihedral_angle_1_deg 7.054 r_dihedral_angle_4_deg 6.395 r_rigid_bond_restr 4.783 r_lrange_it 2.777 r_lrange_other 2.362 r_angle_refined_deg 2.034 r_scangle_it 2.034 r_scangle_other 2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 13.366 r_dihedral_angle_3_deg 10.394 r_dihedral_angle_1_deg 7.054 r_dihedral_angle_4_deg 6.395 r_rigid_bond_restr 4.783 r_lrange_it 2.777 r_lrange_other 2.362 r_angle_refined_deg 2.034 r_scangle_it 2.034 r_scangle_other 2.03 r_scbond_it 1.838 r_scbond_other 1.821 r_mcangle_it 1.591 r_mcangle_other 1.587 r_mcbond_it 1.285 r_mcbond_other 1.283 r_angle_other_deg 1.229 r_symmetry_xyhbond_nbd_refined 0.226 r_xyhbond_nbd_refined 0.218 r_nbd_refined 0.2 r_symmetry_nbd_other 0.171 r_nbtor_refined 0.17 r_nbd_other 0.155 r_chiral_restr 0.097 r_symmetry_nbd_refined 0.09 r_symmetry_nbtor_other 0.089 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 582 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing