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Crystal structure of AziU3/U2 from Streptomyces sahachiroi
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.15 20% PEG 3350, 0.2M Magnesium formic acid
Crystal Properties Matthews coefficient Solvent content 2.21 44.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.851 α = 90 b = 132.203 β = 90 c = 157.015 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 PIXEL DECTRIS EIGER X 16M 2020-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.979 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 48.711 100 0.089 0.096 0.999 14.4 6.8 115932
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 100 0.795 0.861 0.824 2.5 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.75 48.711 115838 5707 99.896 0.17 0.169 0.1956 0.1833 19.401
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.775 -1.245 2.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.157 r_dihedral_angle_4_deg 15.928 r_dihedral_angle_3_deg 11.796 r_dihedral_angle_1_deg 6.525 r_lrange_it 3.427 r_lrange_other 3.136 r_angle_other_deg 2.321 r_scangle_it 1.317 r_scangle_other 1.317 r_angle_refined_deg 1.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.157 r_dihedral_angle_4_deg 15.928 r_dihedral_angle_3_deg 11.796 r_dihedral_angle_1_deg 6.525 r_lrange_it 3.427 r_lrange_other 3.136 r_angle_other_deg 2.321 r_scangle_it 1.317 r_scangle_other 1.317 r_angle_refined_deg 1.193 r_mcangle_other 1.076 r_mcangle_it 1.075 r_scbond_it 0.801 r_scbond_other 0.801 r_mcbond_it 0.632 r_mcbond_other 0.63 r_symmetry_nbd_other 0.199 r_nbd_refined 0.191 r_symmetry_nbd_refined 0.189 r_nbd_other 0.174 r_nbtor_refined 0.152 r_xyhbond_nbd_refined 0.125 r_symmetry_xyhbond_nbd_refined 0.082 r_symmetry_nbtor_other 0.061 r_chiral_restr 0.047 r_bond_other_d 0.035 r_gen_planes_other 0.005 r_gen_planes_refined 0.004 r_bond_refined_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8159 Nucleic Acid Atoms Solvent Atoms 1032 Heterogen Atoms 16
Software Software Software Name Purpose XDS data reduction Aimless data scaling CRANK2 phasing REFMAC refinement