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Structure of the flavin-dependent monooxygenase FlsO1 from the biosynthesis of fluostatinsin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 0.02 M Sodium/potassium phosphate, 0.1 M Bis-Tris propane, pH 6.5, 20 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.64 53.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.54 α = 91.314 b = 84.636 β = 107.86 c = 102.799 γ = 115.391
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 200K 2019-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 13.182 98.9 0.066 12.9 3.6 95967
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 0.39 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2QA1 2.3 13.182 95566 4704 98.523 0.214 0.2115 0.2709 0.2424 29.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.811 -1.894 0.969 -0.351 0.291 0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.767 r_dihedral_angle_4_deg 20.541 r_dihedral_angle_3_deg 16.835 r_dihedral_angle_1_deg 7.111 r_lrange_it 6.015 r_lrange_other 5.954 r_scangle_it 3.583 r_scangle_other 3.583 r_mcangle_it 3.506 r_mcangle_other 3.506
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.767 r_dihedral_angle_4_deg 20.541 r_dihedral_angle_3_deg 16.835 r_dihedral_angle_1_deg 7.111 r_lrange_it 6.015 r_lrange_other 5.954 r_scangle_it 3.583 r_scangle_other 3.583 r_mcangle_it 3.506 r_mcangle_other 3.506 r_scbond_it 2.271 r_scbond_other 2.267 r_mcbond_it 2.227 r_mcbond_other 2.227 r_angle_refined_deg 1.5 r_angle_other_deg 1.293 r_symmetry_xyhbond_nbd_refined 0.29 r_nbd_other 0.267 r_symmetry_nbd_refined 0.253 r_xyhbond_nbd_refined 0.216 r_nbd_refined 0.207 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.163 r_symmetry_xyhbond_nbd_other 0.11 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.066 r_metal_ion_refined 0.029 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14414 Nucleic Acid Atoms Solvent Atoms 1015 Heterogen Atoms 283
Software Software Software Name Purpose REFMAC refinement PHENIX refinement Aimless data scaling MOLREP phasing CrysalisPro data reduction