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Phloem lectin (PP2) structure -native form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 295 1.0 M Ammonium citrate dibasic, 0.1 M Sodium acetate trihydrate pH 4.6
Crystal Properties Matthews coefficient Solvent content 2.97 58.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.69 α = 90 b = 52.69 β = 90 c = 261.83 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.5 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 45.6 99.9 0.09 56.6 70.1 575252 14.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 0.198
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 45.5 8208 411 99.7 0.196 0.2046 0.256 0.2571 18.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.685 0.343 0.685 -2.223
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.262 r_dihedral_angle_4_deg 18.166 r_dihedral_angle_3_deg 15.361 r_dihedral_angle_1_deg 7.937 r_scangle_it 2.789 r_scangle_other 2.788 r_mcangle_it 2.63 r_mcangle_other 2.629 r_angle_other_deg 2.479 r_scbond_it 1.778
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.262 r_dihedral_angle_4_deg 18.166 r_dihedral_angle_3_deg 15.361 r_dihedral_angle_1_deg 7.937 r_scangle_it 2.789 r_scangle_other 2.788 r_mcangle_it 2.63 r_mcangle_other 2.629 r_angle_other_deg 2.479 r_scbond_it 1.778 r_scbond_other 1.777 r_angle_refined_deg 1.74 r_mcbond_other 1.644 r_mcbond_it 1.643 r_nbd_other 0.214 r_nbtor_refined 0.174 r_nbd_refined 0.163 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.104 r_bond_other_d 0.036 r_bond_refined_d 0.014 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1187 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling AutoSol phasing