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Crystal structure of juvenile hormone acid methyltransferase JHAMT isoform3 from silkworm
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 0.1M Tris pH8.5, 0.2M magnesium chloride, 20% polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.12 41.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.057 α = 69.007 b = 52.564 β = 75.727 c = 57.261 γ = 83.352
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.979 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 52.14 94.3 0.114 0.136 17.11 2.9 28167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.22 0.452
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.133 52.137 28167 1382 93.893 0.197 0.1945 0.2022 0.2417 0.2505 RANDOM 47.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.638 -2.51 0.272 0.867 0.506 -1.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.394 r_dihedral_angle_4_deg 17.744 r_dihedral_angle_3_deg 16.455 r_lrange_it 9.571 r_lrange_other 9.57 r_dihedral_angle_1_deg 7.421 r_scangle_it 7.301 r_scangle_other 7.3 r_mcangle_other 5.222 r_mcangle_it 5.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.394 r_dihedral_angle_4_deg 17.744 r_dihedral_angle_3_deg 16.455 r_lrange_it 9.571 r_lrange_other 9.57 r_dihedral_angle_1_deg 7.421 r_scangle_it 7.301 r_scangle_other 7.3 r_mcangle_other 5.222 r_mcangle_it 5.22 r_scbond_it 4.678 r_scbond_other 4.677 r_mcbond_it 3.543 r_mcbond_other 3.536 r_angle_refined_deg 1.523 r_angle_other_deg 1.254 r_symmetry_nbd_refined 0.236 r_nbd_other 0.233 r_nbd_refined 0.218 r_symmetry_nbd_other 0.205 r_symmetry_xyhbond_nbd_refined 0.174 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.142 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.07 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4218 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction MOLREP phasing PDB_EXTRACT data extraction HKL-3000 data scaling