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Klebsiella pneumoniae adenosine monophosphate nucleosidase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T8R
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.4145 f_angle_d 0.5475 f_chiral_restr 0.0444 f_plane_restr 0.0046 f_bond_d 0.0045
Sample Adenosine monophosphate nucleosidase
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details 9 second blot
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 114781 Reported Resolution (Å) 3.05 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry D3
Map-Model Fitting and Refinement Id 1 (1T8R) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 96000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.3.1 CTF CORRECTION cryoSPARC 3.3.1 MODEL FITTING PHENIX 1.18.2-3874 INITIAL EULER ASSIGNMENT cryoSPARC 3.3.1 FINAL EULER ASSIGNMENT cryoSPARC 3.3.1 CLASSIFICATION cryoSPARC 3.3.1 RECONSTRUCTION cryoSPARC 3.3.1 MODEL REFINEMENT PHENIX 1.18.2-3874
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1494578