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Product of 14mer primer with activated G monomer diastereomer 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6C8O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 20 mM Magnesium chloride, 50 mM MOPS pH 7.0, 2.0 M Ammonium sulfate, 0.5 mM Spermine
Crystal Properties Matthews coefficient Solvent content 2.41 48.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.204 α = 90 b = 43.204 β = 90 c = 85.638 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD ADSC QUANTUM 315r 2021-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.6 0.086 0.091 0.029 0.989 21 10.1 11662
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.65 98.9 0.26 0.277 0.093 0.995 5.6 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6C8O 1.65 28.562 10238 542 87.437 0.22 0.216 0.2223 0.2816 0.2874 15.201
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.003 -0.001 -0.003 0.009
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 5.065 r_lrange_it 5.059 r_angle_other_deg 3.474 r_scangle_it 3.214 r_scangle_other 3.213 r_angle_refined_deg 2.984 r_scbond_it 1.955 r_scbond_other 1.955 r_chiral_restr_other 1.62 r_symmetry_nbtor_other 0.263
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 5.065 r_lrange_it 5.059 r_angle_other_deg 3.474 r_scangle_it 3.214 r_scangle_other 3.213 r_angle_refined_deg 2.984 r_scbond_it 1.955 r_scbond_other 1.955 r_chiral_restr_other 1.62 r_symmetry_nbtor_other 0.263 r_nbtor_refined 0.253 r_symmetry_nbd_other 0.24 r_xyhbond_nbd_refined 0.229 r_nbd_refined 0.219 r_chiral_restr 0.191 r_nbd_other 0.19 r_symmetry_xyhbond_nbd_refined 0.145 r_symmetry_nbd_refined 0.1 r_bond_other_d 0.029 r_bond_refined_d 0.021 r_gen_planes_refined 0.017 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 424 Solvent Atoms 100 Heterogen Atoms 278
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing